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1

Hypergraph Partitioning-Based Fill-Reducing Ordering for Symmetric Matrices

Çatalyürek, Ümit V., Aykanat, Cevdet, Kayaaslan, Enver

Journal:

SIAM Journal on Scientific Computing

Year:

2011

Language:

english

File:

PDF, 1.48 MB

english, 2011

2

An XML-based System for Synthesis of Data from Disparate Databases

Tahsin Kurc, Daniel A. Janies, Andrew D. Johnson, Stephen Langella, Scott Oster, Shannon Hastings, Farhat Habib, Terry Camerlengo, David Ervin, Umit V. Catalyurek, Joel H. Saltz

Journal:

Journal of the American Medical Informatics Association

Year:

2006

Language:

english

File:

PDF, 582 KB

english, 2006

3

A framework for scalable greedy coloring on distributed-memory parallel computers

Doruk Bozdağ, Assefaw H. Gebremedhin, Fredrik Manne, Erik G. Boman, Umit V. Catalyurek

Journal:

Journal of Parallel and Distributed Computing

Year:

2008

Language:

english

File:

PDF, 663 KB

english, 2008

4

[IEEE 2018 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM) - Barcelona, Spain (2018.8.28-2018.8.31)] 2018 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM) - SiNA: A Scalable Iterative Network Aligner

Yasar, Abdurrahman, Ucar, Bora, Catalyurek, Umit V.

Year:

2018

Language:

english

File:

PDF, 21.74 MB

english, 2018

5

[IEEE Distributed Processing Symposium (IPDPS) - Miami, FL, USA (2008.04.14-2008.04.18)] 2008 IEEE International Symposium on Parallel and Distributed Processing - Translational research design templates, Grid computing, and HPC

Saltz, Joel, Oster, Scott, Hastings, Shannon, Langella, Stephen, Ferreira, Renato, Permar, Justin, Sharma, Ashish, Ervin, David, Pan, Tony, Catalyurek, Umit, Kurc, Tahsin

Year:

2008

Language:

english

File:

PDF, 795 KB

english, 2008

6

Advances in parallel partitioning, load balancing and matrix ordering for scientific computing

Boman, Erik G, Catalyurek, Umit V, Chevalier, Céedric, Devine, Karen D, Safro, Ilya, Wolf, Michael M

Journal:

Journal of Physics Conference Series

Year:

2009

Language:

english

File:

PDF, 690 KB

english, 2009

7

Multilevel Algorithms for Acyclic Partitioning of Directed Acyclic Graphs

Herrmann, Julien, Özkaya, M. Yusuf, Uçar, Bora, Kaya, Kamer, Çatalyürek, Ümit V.

Journal:

SIAM Journal on Scientific Computing

Year:

2019

File:

PDF, 758 KB

2019

8

[ACM Press the 24th International Conference - Florence, Italy (2015.05.18-2015.05.22)] Proceedings of the 24th International Conference on World Wide Web - WWW '15 - Finding the Hierarchy of Dense Subgraphs using Nucleus Decompositions

Sariyuce, Ahmet Erdem, Seshadhri, C., Pinar, Ali, Catalyurek, Umit V.

Year:

2015

Language:

english

File:

PDF, 1.68 MB

english, 2015

9

Partitioning Hypergraphs in Scientific Computing Applications through Vertex Separators on Graphs

Kayaaslan, Enver, Pinar, Ali, Çatalyürek, Ümit, Aykanat, Cevdet

Journal:

SIAM Journal on Scientific Computing

Year:

2012

Language:

english

File:

PDF, 451 KB

english, 2012

10

Permuting Sparse Rectangular Matrices into Block-Diagonal Form

Aykanat, Cevdet, Pinar, Ali, Çatalyürek, Ümit V.

Journal:

SIAM Journal on Scientific Computing

Year:

2004

Language:

english

File:

PDF, 792 KB

english, 2004

11

Dynamic generation of accident progression event trees

Aram Hakobyan, Tunc Aldemir, Richard Denning, Sean Dunagan, David Kunsman, Benjamin Rutt, Umit Catalyurek

Journal:

Nuclear Engineering and Design

Year:

2008

Language:

english

File:

PDF, 907 KB

english, 2008

12

A repartitioning hypergraph model for dynamic load balancing

Umit V. Catalyurek, Erik G. Boman, Karen D. Devine, Doruk Bozdağ, Robert T. Heaphy, Lee Ann Riesen

Journal:

Journal of Parallel and Distributed Computing

Year:

2009

Language:

english

File:

PDF, 7.81 MB

english, 2009

13

[IEEE 2019 IEEE International Parallel and Distributed Processing Symposium (IPDPS) - Rio de Janeiro, Brazil (2019.5.20-2019.5.24)] 2019 IEEE International Parallel and Distributed Processing Symposium (IPDPS) - A Scalable Clustering-Based Task Scheduler for Homogeneous Processors Using DAG Partitioning

Ozkaya, M. Yusuf, Benoit, Anne, Ucar, Bora, Herrmann, Julien, Catalyurek, Umit V.

Year:

2019

Language:

english

File:

PDF, 1.02 MB

english, 2019

14

Development of a code-agnostic computational infrastructure for the dynamic generation of accident progression event trees

Umit Catalyurek, Benjamin Rutt, Kyle Metzroth, Aram Hakobyan, Tunc Aldemir, Richard Denning, Sean Dunagan, David Kunsman

Journal:

Reliability Engineering & System Safety

Year:

2010

Language:

english

File:

PDF, 1.28 MB

english, 2010

15

Optimizing the stretch of independent tasks on a cluster: From sequential tasks to moldable tasks

Erik Saule, Doruk Bozdağ, Ümit V. Çatalyürek

Journal:

Journal of Parallel and Distributed Computing

Year:

2012

Language:

english

File:

PDF, 847 KB

english, 2012

16

Hypergraph partitioning for multiple communication cost metrics: Model and methods

Deveci, Mehmet, Kaya, Kamer, Uçar, Bora, Çatalyürek, Ümit V.

Journal:

Journal of Parallel and Distributed Computing

Year:

2015

Language:

english

File:

PDF, 1.74 MB

english, 2015

17

Multilevel Algorithms for Acyclic Partitioning of Directed Acyclic Graphs

Herrmann, Julien, Özkaya, M. Yusuf, Uçar, Bora, Kaya, Kamer, Çatalyürek, Ümit V.

Journal:

SIAM Journal on Scientific Computing

Year:

2019

Language:

english

File:

PDF, 758 KB

english, 2019

18

[IEEE 2009 IEEE International Conference on Cluster Computing and Workshops - New Orleans, LA, USA (2009.08.31-2009.09.4)] 2009 IEEE International Conference on Cluster Computing and Workshops - Investigating the use of GPU-accelerated nodes for SAR image formation

Hartley, Timothy D. R., Fasih, Ahmed R., Berdanier, Charles A., Ozguner, Fusun, Catalyurek, Umit V.

Year:

2009

Language:

english

File:

PDF, 874 KB

english, 2009

19

Graph coloring algorithms for multi-core and massively multithreaded architectures

Ümit V. Çatalyürek, John Feo, Assefaw H. Gebremedhin, Mahantesh Halappanavar, Alex Pothen

Journal:

Parallel Computing

Year:

2012

Language:

english

File:

PDF, 4.00 MB

english, 2012

20

[IEEE Distributed Processing Symposium (IPDPS) - Miami, FL, USA (2008.04.14-2008.04.18)] 2008 IEEE International Symposium on Parallel and Distributed Processing - A dynamic scheduling approach for coordinated wide-area data transfers using GridFTP

Gaurav Khanna,, Umit Catalyurek,, Tahsin Kurc,, Rajkumar Kettimuthu,, Sadayappan, P., Saltz, Joel

Year:

2008

Language:

english

File:

PDF, 491 KB

english, 2008

21

[IEEE 2018 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM) - Barcelona, Spain (2018.8.28-2018.8.31)] 2018 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM) - Local Detection of Critical Nodes in Active Graphs

Ozkaya, M. Yusuf, Sanyuce, Ahmet Erdem, Pinar, Ali, Catalyurek, Umit V.

Year:

2018

Language:

english

File:

PDF, 1.23 MB

english, 2018

22

A Matrix Partitioning Interface to PaToH in MATLAB

Bora Uçar, Ümit V. Çatalyürek, Cevdet Aykanat

Journal:

Parallel Computing

Year:

2010

Language:

english

File:

PDF, 1.21 MB

english, 2010

23

[IEEE 2011 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Atlanta, GA, USA (2011.11.12-2011.11.15)] 2011 IEEE International Conference on Bioinformatics and Biomedicine - Benchmarking Short Sequence Mapping Tools

Hatem, Ayat, Bozdag, Doruk, Catalyurek, Umit V.

Year:

2011

Language:

english

File:

PDF, 148 KB

english, 2011

24

[IEEE Distributed Processing, Workshops and Phd Forum (IPDPSW) - Atlanta, GA, USA (2010.04.19-2010.04.23)] 2010 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum (IPDPSW) - Exploring parallelism in short sequence mapping using Burrows-Wheeler Transform

Bozdag, Doruk, Hatem, Ayat, Catalyurek, Umit V.

Year:

2010

Language:

english

File:

PDF, 821 KB

english, 2010

25

Phylogenetic visualization of the spread of H7 influenza A viruses

Janies, Daniel A., Pomeroy, Laura W., Krueger, Chris, Zhang, Yuqi, Senturk, Izzet F., Kaya, Kamer, Çatalyürek, Ümit V.

Journal:

Year:

2015

Language:

english

File:

PDF, 962 KB

english, 2015

26

[ACM Press the 2006 ACM/IEEE conference - Tampa, Florida (2006.11.11-2006.11.17)] Proceedings of the 2006 ACM/IEEE conference on Supercomputing - SC '06 - Imaging and visual analysis---Large image correction and warping in a cluster environment

Kumar, Vijay S., Rutt, Benjamin, Kurc, Tahsin, Catalyurek, Umit, Saltz, Joel, Chow, Sunny, Lamont, Stephan, Martone, Maryann

Year:

2006

Language:

english

File:

PDF, 385 KB

english, 2006

27

[ACM Press the 2006 ACM/IEEE conference - Tampa, Florida (2006.11.11-2006.11.17)] Proceedings of the 2006 ACM/IEEE conference on Supercomputing - SC '06 - Data management and query---Hypergraph partitioning for automatic memory hierarchy management

Krishnamoorthy, Sriram, Catalyurek, Umit, Nieplocha, Jarek, Rountev, Atanas, Sadayappan, P.

Year:

2006

Language:

english

File:

PDF, 343 KB

english, 2006

28

[IEEE 2015 IEEE International Parallel and Distributed Processing Symposium (IPDPS) - Hyderabad, India (2015.5.25-2015.5.29)] 2015 IEEE International Parallel and Distributed Processing Symposium - Fast and High Quality Topology-Aware Task Mapping

Deveci, Mehmet, Kaya, Kamer, Ucar, Bora, Catalyurek, Umit V.

Year:

2015

Language:

english

File:

PDF, 760 KB

english, 2015

29

[IEEE 2015 IEEE International Conference on Big Data (Big Data) - Santa Clara, CA, USA (2015.10.29-2015.11.1)] 2015 IEEE International Conference on Big Data (Big Data) - Spaler: Spark and GraphX based de novo genome assembler

Abu-Doleh, Anas, Catalyurek, Umit V.

Year:

2015

Language:

english

File:

PDF, 660 KB

english, 2015

30

A resource provisioning framework for bioinformatics applications in multi-cloud environments

Senturk, Izzet F., Balakrishnan, P., Abu-Doleh, Anas, Kaya, Kamer, Malluhi, Qutaibah, Çatalyürek, Ümit V.

Journal:

Future Generation Computer Systems

Year:

2016

Language:

english

File:

PDF, 3.35 MB

english, 2016

31

Metagenomic Insights into the Carbohydrate-Active Enzymes Carried by the Microorganisms Adhering to Solid Digesta in the Rumen of Cows

Wang, Lingling, Hatem, Ayat, Catalyurek, Umit V., Morrison, Mark, Yu, Zhongtang, Smidt, Hauke

Journal:

Year:

2013

Language:

english

File:

PDF, 1.15 MB

english, 2013

32

[IEEE 2019 IEEE High Performance Extreme Computing Conference (HPEC) - Waltham, MA, USA (2019.9.24-2019.9.26)] 2019 IEEE High Performance Extreme Computing Conference (HPEC) - Scalable Triangle Counting on Distributed-Memory Systems

Acer, Seher, Yasar, Abdurrahman, Rajamanickam, Sivasankaran, Wolf, Michael, Catalyurek, Umit V.

Year:

2019

File:

PDF, 918 KB

2019

33

[IEEE 2013 42nd International Conference on Parallel Processing (ICPP) - Lyon, France (2013.10.1-2013.10.4)] 2013 42nd International Conference on Parallel Processing - Hypergraph Sparsification and Its Application to Partitioning

Deveci, Mehmet, Kaya, Kamer, Catalyurek, Umit V.

Year:

2013

Language:

english

File:

PDF, 1.34 MB

english, 2013

34

[IEEE 2007 8th IEEE/ACM International Conference on Grid Computing - Austin, TX, USA (2007.09.19-2007.09.21)] 2007 8th IEEE/ACM International Conference on Grid Computing - Optimizing multiple queries on scientific datasets with partial replicas

Weng, Li, Catalyurek, Umit, Kurc, Tahsin, Agrawal, Gagan, Saltz, Joel

Year:

2007

Language:

english

File:

PDF, 382 KB

english, 2007

35

[IEEE 2014 IEEE International Parallel & Distributed Processing Symposium (IPDPS) - Phoenix, AZ, USA (2014.5.19-2014.5.23)] 2014 IEEE 28th International Parallel and Distributed Processing Symposium - Exploiting Geometric Partitioning in Task Mapping for Parallel Computers

Deveci, Mehmet, Rajamanickam, Sivasankaran, Leung, Vitus J., Pedretti, Kevin, Olivier, Stephen L., Bunde, David P., Catalyurek, Umit V., Devine, Karen

Year:

2014

Language:

english

File:

PDF, 833 KB

english, 2014

36

[IEEE 2012 41st International Conference on Parallel Processing (ICPP) - Pittsburgh, PA, USA (2012.09.10-2012.09.13)] 2012 41st International Conference on Parallel Processing - On Shared-Memory Parallelization of a Sparse Matrix Scaling Algorithm

Catalyurek, Umit V., Kaya, Kamer, Ucar, Bora

Year:

2012

Language:

english

File:

PDF, 433 KB

english, 2012

37

KELVIN: A Software Package for Rigorous Measurement of Statistical Evidence in Human Genetics

Vieland, Veronica J., Huang, Yungui, Seok, Sang-Cheol, Burian, John, Catalyurek, Umit, O’Connell, Jeffrey, Segre, Alberto, Valentine-Cooper, William

Journal:

Year:

2011

Language:

english

File:

PDF, 758 KB

english, 2011

38

[IEEE 2014 IEEE International Parallel & Distributed Processing Symposium Workshops (IPDPSW) - Phoenix, AZ, USA (2014.5.19-2014.5.23)] 2014 IEEE International Parallel & Distributed Processing Symposium Workshops - HiCOMB Keynote and Invited Talks

Larson, Stephen, Catalyurek, Umit V., Kalyanaraman, Ananth

Year:

2014

Language:

english

File:

PDF, 139 KB

english, 2014

39

Stroma classification for neuroblastoma on graphics processors

Ruiz, Antonio, Sertel, Olcay, Ujaldon, Manuel, Catalyurek, Umit, Saltz, Joel, Gurcan, Metin N.

Journal:

International Journal of Data Mining and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 3.52 MB

english, 2009

40

Optimizing latency and throughput of application workflows on clusters

Naga Vydyanathan, Umit Catalyurek, Tahsin Kurc, Ponnuswamy Sadayappan, Joel Saltz

Journal:

Parallel Computing

Year:

2011

Language:

english

File:

PDF, 1.44 MB

english, 2011

41

mrSNP: Software to detect SNP effects on microRNA binding

Deveci, Mehmet, Çatalyürek, Ümit V, Toland, Amanda

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 424 KB

english, 2014

42

[ACM Press the International Conference - Wshington DC, USA (2013.09.22-2013.09.25)] Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics - BCB'13 - PRASE

Hatem, Ayat, Kaya, Kamer, Çatalyürek, Ümit V.

Year:

2007

Language:

english

File:

PDF, 1.42 MB

english, 2007

43

[ACM Press the 2001 ACM/IEEE conference - Denver, Colorado (2001.11.10-2001.11.16)] Proceedings of the 2001 ACM/IEEE conference on Supercomputing (CDROM) - Supercomputing '01 - A hypergraph-partitioning approach for coarse-grain decomposition

Çatalyürek, Ümit V., Aykanat, Cevdet

Year:

2001

Language:

english

File:

PDF, 453 KB

english, 2001

44

Graph Manipulations for Fast Centrality Computation

Sariyüce, Ahmet Erdem, Kaya, Kamer, Saule, Erik, Çatalyürek, Ümit V.

Journal:

ACM Transactions on Knowledge Discovery from Data

Year:

2017

Language:

english

File:

PDF, 1.46 MB

english, 2017

45

[Communications in Computer and Information Science] Contemporary Computing Volume 168 ||

Aluru, Srinivas, Bandyopadhyay, Sanghamitra, Catalyurek, Umit V., Dubhashi, Devdatt P., Jones, Phillip H., Parashar, Manish, Schmidt, Bertil

Year:

2011

Language:

english

File:

PDF, 12.17 MB

english, 2011

46

[IEEE Distributed Processing (IPDPS) - Rome, Italy (2009.05.23-2009.05.29)] 2009 IEEE International Symposium on Parallel & Distributed Processing - A component-based framework for the Cell Broadband Engine

Hartley, Timothy D. R., Catalyurek, Umit V.

Year:

2009

Language:

english

File:

PDF, 439 KB

english, 2009

47

[ACM Press the First ACM International Conference - Niagara Falls, New York (2010.08.02-2010.08.04)] Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology - BCB '10 - Comparative analysis of biclustering algorithms

Bozdağ, Doruk, Kumar, Ashwin S., Catalyurek, Umit V.

Year:

2010

Language:

english

File:

PDF, 506 KB

english, 2010

48

[ACM Press the 6th Workshop - Houston, Texas (2013.03.16-2013.03.16)] Proceedings of the 6th Workshop on General Purpose Processor Using Graphics Processing Units - GPGPU-6 - Betweenness centrality on GPUs and heterogeneous architectures

Sariyüce, Ahmet Erdem, Kaya, Kamer, Saule, Erik, Çatalyürek, Ümit V.

Year:

2013

Language:

english

File:

PDF, 1.33 MB

english, 2013

49

No Core CI calculations for light nuclei with chiral 2- and 3-body forces

Maris, Pieter, Aktulga, H Metin, Binder, Sven, Calci, Angelo, Çatalyürek, Ümit V, Langhammer, Joachim, Ng, Esmond, Saule, Erik, Roth, Robert, Vary, James P, Yang, Chao

Journal:

Journal of Physics Conference Series

Year:

2013

Language:

english

File:

PDF, 781 KB

english, 2013

50

Enabling high performance computational science through combinatorial algorithms

Boman, Erik G, Bozdag, Doruk, Catalyurek, Umit V, Devine, Karen D, Gebremedhin, Assefaw H, Hovland, Paul D, Pothen, Alex, Strout, Michelle Mills

Journal:

Journal of Physics Conference Series

Year:

2007

Language:

english

File:

PDF, 1.28 MB

english, 2007

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